PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08341g10005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 322aa    MW: 36136.5 Da    PI: 5.5476
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08341g10005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.23.4e-35121042103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               F+ k+y++++d++++ li w +++nsf+v+++ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F
  Niben101Scf08341g10005.1  12 FVLKTYQMVNDPKIDGLIAWGKENNSFIVVEPLDFSQRILPIYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEWF 87 
                               9****************************************************************999.........******** PP

                               XXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkkse 103
                                +g+++ll++i r+k++
  Niben101Scf08341g10005.1  88 LRGQTHLLKNIVRRKHS 104
                               *************9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.2E-488101IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-339101IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.5E-3610101IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.6E-171235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.6E-2912101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-175062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-176375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEANNSNIIA PFVLKTYQMV NDPKIDGLIA WGKENNSFIV VEPLDFSQRI LPIYFKHNNF  60
SSFVRQLNTY GFRKVDPDKW EFANEWFLRG QTHLLKNIVR RKHSRNSYSL KQDESEDEEI  120
YTEIARLKQE QKALEQEVEN MTKRLEATEK RPQQMMAFLC KVVDDPEILP RILLEKERSK  180
RVSLNNSEKK RRIMISNNST SCSSVKSEEE VGDPLVGAIS SFRSPDANFD KDTLCQSSPS  240
SETPATTWIG GRPMITYEPY RSFPAMSSSL SSGSSDSGGF TKAPSSEAFS GYDYSGGGGG  300
GSVAAEEVSP PPYPFSLLGG GF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D2e-23310121129Heat shock factor protein 1
5d5v_B2e-23310121129Heat shock factor protein 1
5d5u_B2e-23310121129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770587.10.0PREDICTED: heat stress transcription factor C-1
RefseqXP_016479969.10.0PREDICTED: heat stress transcription factor C-1-like
SwissprotQ9LV525e-91HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLM0ZHR41e-165M0ZHR4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000010251e-164(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68322333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.18e-91heat shock transcription factor C1